Gmelin Database Trial now through 8/30/08

The UMass Amherst Sciences & Engineering Library has arranged for a trial subscription to the Gmelin database now through August 30th.

The Gmelin Database is the sister database to Beilstein, covering inorganic and organometallic compounds from 1772 to date. Based on a German publication, the Gmelin Handbuch der anorganischen Chemie, the database currently comprises over 2.5 million compounds, including glasses, alloys, ceramics, minerals and coordination compounds, 1.9 million reactions and 1.3 million citations.

During this time period we will also have access to the Patent Chemistry Database.

For instructions on how to connect to the database contact Paulina Borrego pborrego@library.umass.edu

Darwinmania!

New York Times blog post (June 17, 2008) from Olivia Judson on the upcoming 200th anniverary of Charles Darwin's birth Feb 12, 2009; also, "July 1 [2008] is the 150th anniversary of the first announcement of his discovery of natural selection, the main driving force of evolution." This was at a meeting of the Linnean Society of London (see yesterday's blog post on the Linnean Society collections) where both Alfred Russel Wallace and Darwin read papers on natural selection. Judson outlines the prior claimants to the concept of evolution and natural selection, and then asks the question, why do we celebrate Darwin over any of these others? it was for On the Origin of Species, published on November 24, 1859.

The reason the “Origin” was so powerful, compelling and persuasive, the reason Darwin succeeded while his predecessors failed, is that in it he does not just describe how evolution by natural selection works. He presents an enormous body of evidence culled from every field of biology then known. He discusses subjects as diverse as pigeon breeding in Ancient Egypt, the rudimentary eyes of cave fish, the nest-building instincts of honeybees, the evolving size of gooseberries (they’ve been getting bigger), wingless beetles on the island of Madeira and algae in New Zealand. One moment, he’s considering fossil animals like brachiopods (which had hinged shells like clams, but with a different axis of symmetry); the next, he’s discussing the accessibility of nectar in clover flowers to different species of bee.

At the same time, he uses every form of evidence at his disposal: he observes, argues, compares, infers and describes the results of experiments he has read about, or in many cases, personally conducted. For example, one of Darwin’s observations is that the inhabitants of islands resemble — but differ subtly from — those of the nearest continents. So: birds and bushes on islands off the coast of South America resemble South American birds and bushes; islands near Africa are populated by recognizably African forms.

He argues that the reason for this is that new islands become colonized by beings from the nearest continents, and that the new inhabitants then begin evolving independently. He then asks: can animals and plants from the continents get to new islands, especially those that are far out at sea? To investigate this, he conducts experiments to see how long seeds from different plants can remain immersed in saltwater and still begin to grow. In short, he tests his reasoning over and over again.

Let's celebrate Darwin's birth this coming February! And then the publication of Origin in November!

Science Blogs

As you all know, the blogosphere is burgeoning - people have things to say, and the Web makes it possible for folks to find an audience easily. The thing to do is find the right name!

I was reading a blog I found through the environmentalresearchweb newswire written by a woman named Liz Kalaugher doing Arctic research onboard the icebreaker/research vessel Amundsen, and started wondering if someone was collecting all the science blogs.

So I Googled "science blogs" - and found someone has taken that name. Seed Media Group has a site called "Science Blogs" - a group of about 70+ bloggers that this company has selected. So no, I haven't found a collection of all science blogs yet, but there's some pretty interesting stuff on this site - not just people propounding their own point of view, but discussion from readers. In my opinion, that's where the real action is.

For instance, I sampled a blog called Drug Monkey which is written by DrugMonkey, an NIH-funded biomedical researcher, and PhysioProf, an NIH-funded basic science faculty member at a private medical school. PhysioProf was ranting about (1) the way up-and-coming scientists - grad students, post-docs - are not exposed to the possibilities of 'alternative' career paths other than 'academic science' (in the private sector); and (2) don't expect him to change the system - he's only one person. This piece was posted yesterday, and there are 40 responses from thoughtful (mostly) people as of this writing. Forty responses tells me the blog has a lot of people who follow it, not only reading but writing in. It's a little community.

If anyone finds a big list of science blogs from different sources, please let me know - I'd like to start collecting them, if not reading them!

Linnean Collections online

The Linnean Society of London (U.K.) is creating a digital image collection of the plants and insects in their possession. They have completed the 14,000 plants, and the moths and butterflies segment of the insect collection. The images show both top and bottom views of the butterflies/moths, and the labels. The photographs are beautiful.

From various pages on their website:

The Linnean Society of London holds some 9,000 specimens, including 3,200 Linnaean ones, of which many are important types. After acquiring the collections from the widow of Linnaeus in 1784, Sir James Edward Smith, the founder and first President of the Linnean Society, added his own specimens to the collection, almost trebling its size. Because of difficulties in recognising all the material interpolated by Smith it has been maintained as a single historic collection. Besides insects as we understand them today, the collection also includes such things as spiders, scorpions, millipedes and crabs – all ‘insects’ as Linnaeus understood them.

The prime scientific importance of the Linnaean part of the collection is as type* specimens for the species which he described. Smith's material (which can often be distinguished from Linnaeus' by the type of pins used to secure specimens) is a valuable source of information on insects from around the globe in the late 18th and early 19th centuries, but so far has been little exploited.
[*A type specimen is one which is permanently associated with a given scientific name, and acts as a permanent reference point to confirm the identity of the species to which the name must apply.]

For more information see "The 'Linnaean' insect collection" by Mike Fitton and Kim Harman in The Linnean Special Issue No. 7, 2007, 'The Linnaean Collections'.

...

The Linnaean Collections comprise the specimens of plants (14,000), fish (158), shells (1,564) and insects (3,198) acquired from the widow of Carl Linnaeus in 1784 by Sir James Edward Smith, founder and first President of the Linnean Society. They also include the library of Linnaeus (of some 1,600 volumes) and his letters (c. 3,000 items of correspondence and manuscripts). All are housed in a temperature and humidity controlled strongroom in the Linnean Society.

It is the Linnean Society's aim to make available its primary research material in digital formats to support taxonomic and conservation efforts worldwide as well as providing public pleasure and enjoyment.

Browse the Collections
Search the Collections by categories: Herbarium or Insects.

The Herbarium archive contains all 14,000 Linnaean plant specimens. This first phase of the Insects archive contains the Linnaean and Smithian butterflies and moths only. All the remaining insects from the collection will be made available early in 2009.

Apparently, the Fish and Shell Collections will also be digitized, eventually.

Database Trial - Henry Stewart Talks: Biomedical and Life Sciences Collection

The library currently has a trial subscription to the Henry Stewart Talks: Biomedical and Life Sciences Collection database. View more than 700 online animated seminar style talks by leading scientists on biomedical and life sciences topics.

The trial ends June 30, 2008.

Send comments to cpmullen@library.umass.edu

Yes, We Will Have No Bananas

New York Times Op-Ed from Dan Koeppel, the author of “Banana: The Fate of the Fruit That Changed the World,” suggests that distance, the practice of monoculture, and a virus will cause bananas to become much more expensive, and be regarded as what they are, "an exotic fruit that, some day soon, may slip beyond our reach."

New 'super-paper' is stronger than cast iron

Article on the New Scientist Tech site - perhaps of interest to our wood technology folks, as well as the nano folks, and anyone interested in new materials.

First three paragraphs:

Punching your way out of a paper bag could become a lot harder, thanks to the development of a new kind of paper that is stronger than cast iron.

The new paper could be used to reinforce conventional paper, produce extra-strong sticky tape or help create tough synthetic replacements for biological tissues, says Lars Berglund from the Swedish Royal Institute of Technology in Stockholm, Sweden.

Despite its great strength, Berglund's "nanopaper" is produced from a biological material found in conventional paper: cellulose. This long sugar molecule is a principal component of plant cell walls and is the most common organic compound on Earth.

Another blog

I really enjoy Olivia Judson's blog posts for the New York Times. She's an evolutionary biologist at Imperial College in London, and she's witty, imaginative and seems really smart. Today's post discusses the bacteria discovered in rocks deep below the seafloor, and the possibility that they may contribute to weathering of the crust. She has blogged about ichnofossils, rain-seeding bacteria, and what the world would be like if all genetic mutation stopped. She is given to flights of fancy, like this one on dinosaur mating habits:

"Which brings me to my tyrannical fantasy. I want to take a journey 68 million years back in time to see a Tyrannosaurus rex couple mating. What was it like? Did they trumpet and bellow and stamp their feet? Did they thrash their enormous tails? Did he bite her neck in rapture and exude a musky scent? Somehow, I imagine that when two T. rex got it on, the earth shook for miles around."

Or this one on things that live among pineapple leaves:

"The other day, I went to the supermarket to buy a pineapple. I didn’t select the one that smelled the ripest, but the one with the most impressive leaves: tall, bushy and uncrushed by the journey from Costa Rica. When I got it home, I put it in the kitchen sink, turned on the tap, and watched how the water gathered and formed pools in the spaces between the leaves. And I began to imagine that I was not a human in an apartment in London, but a small frog in a tropical forest, climbing up the leaves of a plant like a pineapple, looking for a pool where I could deposit the tadpole I’m carrying on my back."

Her curiosity as an evolutionary biologist leads her to think about a range of environments, from clouds to the "deep subsurface biosphere." As a geologist, I find lots to think about in her articles. Take a look at a couple yourself. They make for provocative reading, but they're somehow relaxing.

Journals Find Fakery in Many Images Submitted to Support Research

Article by Jeffrey R. Young in the Chronicle of Higher Education, May 29, 2008 on doctored images in scientific journals, their prevalence, detection, and consequences.

"Kristin Roovers was a postdoctoral fellow at the University of Pennsylvania with a bright career ahead of her—a trusted member of a research laboratory at the medical school studying the role of cell growth in diabetes.

"But when an editor of The Journal of Clinical Investigation did a spot-check of one of her images for an article in 2005, Roovers's research proved a little too perfect."

Putting science into people's lives

A thoughtful op-ed article from the New York Times, June 1:

Put a Little Science in Your Life

By BRIAN GREENE
Published: June 1, 2008
Science is a language of hope and inspiration, providing discoveries that fire the imagination and instill a sense of connection to our lives and our world.

'... in teaching our students, we continually fail to activate rich opportunities for revealing the breathtaking vistas opened up by science, and instead focus on the need to gain competency with science’s underlying technical details.

'In fact, many students I’ve spoken to have little sense of the big questions those technical details collectively try to answer: Where did the universe come from? How did life originate? How does the brain give rise to consciousness? Like a music curriculum that requires its students to practice scales while rarely if ever inspiring them by playing the great masterpieces, this way of teaching science squanders the chance to make students sit up in their chairs and say, “Wow, that’s science?”'

Brian Greene, a professor of physics at Columbia, is the author of “The Elegant Universe” and “The Fabric of the Cosmos.”

New Art Exhibit at ISEL

“Images: Neotropical Birds”

An exhibit of photographs by Jeff Podos at the Integrated Sciences & Engineering Library

Associate Professor of Biology Jeff Podos’ exhibit of Neotropical birds is on display from May 5 to August 29, 2008 in the Integrated Sciences and Engineering Library, Graduate Research Center Lowrise at UMass Amherst.

The exhibit includes twelve 16" x 20" color photos or photo montages of birds from the Brazilian Atlantic Rainforest and the Galápagos Islands. The birds were photographed in their natural environments.

Jeff Podos has been affiliated with UMass Amherst since 2000 and is currently an Associate Professor of Biology. With the help of his students and collaborators, he studies the behavior and evolution of birds, with particular emphasis on the evolution, function, and development of vocal signals.

According to Professor Podos, “the Neotropical region supports a remarkable diversity of bird species, including many species that are found only in specific regions such as the Brazilian Atlantic Rain Forest. Brazil by itself contains about 1700 described species, with new species being described each year. All of North America, by contrast, supports about 700 bird species. Much about the lives of Neotropical birds -- their behavior, distribution, mating patterns, and so on -- remains relatively unknown.”

For more information contact Paulina Borrego at pborrego@library.umass.edu or 545-7891.

What Have You Done With Your Cognitive Surplus Lately?

Clay Shirky explains how 1 trillion hours of worldwide television consumption per year could translate into 10,000 Wikipedia projects per year. If only we could kick Desperate Housewives.

It's National Library Week-- Do you know where your librarian is?

Since 1958, the nation has designated a week in April as National Library Week. Since we're in the midst of it now, I thought I'd talk about one relatively new aspect of the UMass Libraries-- the Peripatetic Librarian.

As more library resources become available electronically, some people think they don't need librarians to get the information they need. Of course, that's not true. Nevertheless, some people avoid coming to the library for help. Librarians being who they are, then, ride out to the rescue.

At UMass, I'm aware of four outside-the-library places where you might find us waiting for your questions, or maybe just reminding you by our presence that you have a question.

• Mike Davis, Library Liaison to the Isenberg School of Management, holds office hours there in Room 212 every Tuesday from 10:30am to 12:30pm.

• Barbara Morgan, Liaison to Legal Studies, Political Science, STPEc, and Steve McGinty, Liaison to the College of Social and Behavioral Sciences, as well as Sociology, SDPPS, TEC, Economics, Educational Policy, and Research & Administration (whew!) can be found just outside the Thompson Cafe each Wednesday and Thursday from 11:30am to 12:30pm.

• Maxine Schmidt (that'd be me), Liaison to Biology, Environmental Sciences, Geosciences, and Resource Economics-- in the Blue Wall every Wednesday from 10am to noon.

• Madeleine Charney, Liaison to the Stockbridge School of Agriculture and Landscape Architecture, is currently on maternity leave, but normally holds hours in Hills.

So stop by one of these outposts and say hi sometime, and look for more of us in more places outside the library. Of course, you're always welcome in the Good Ole Library too!

New Subject Guides

The UMass Library subject guides are getting a makeover! We are using an application called LibGuides that gives us a lot more flexibility with content and style. We can include rss feeds from blogs and news sources, embed videos and even a chat widget, so you can "chat" with us live when we're online. You can also comment on the guides and their contents. The guides we have up so far look really good, and we'd love your feedback. Check them out at http://umass.libguides.com
There are four ISEL-related ones at present. You can also find some at the appropriate pages on the new Research Database Locator

New Journal Ranking Source

BioMed Central's blog has a piece on "SCImago – a new source of journal metrics offering a wealth of free data on open access journals." The importance of a specific journal is of interest to anyone publishing their research - obviously, one would prefer to publish in a journal with the greatest impact. Thomson Scientific, as the first to create this metric using Citation Indexing with their Journal Citation Ranking (JCR), has long had the dominant role, but many have criticized their methodology, and been frustrated by their slowness to include new journals. Also, this service is costly.

A few companies have challenged Thomson Scientific's monopoly (Scopus and Google Scholar, for example) and now SCImago has joined the fray. It uses data from Scopus, and gives weights to the citations based on their sources - a citation from a lesser-read journal will have lower impact on the rating than one from Nature or Science.

Thanks, to Jim Craig for bringing this to our attention.

Two-sided printing available at ISEL

In response to numerous requests from our patrons, printing on both sides of the sheet is available from public workstations.

Two points:

Send the print job through as a two-sided print request - you cannot choose it after sending it the printer. This means you shouldn't just click on the printing icons that send the print job directly to the printer without bringing up a dialog box. In the printing dialog box, select Properties; this usually brings up Printing Shortcuts, where you can chose Two-Sided Printing.

The cost is the same as whether you use one or two sheets of paper to print two sides. The only benefit to you is that it uses less paper.

Any questions, please ask the library staff.

Wireless access vastly improved at ISEL

Recently, new nodes for wireless network access were installed and activated by OIT. We now have much better signal strength on all four floors, though perhaps the best signal is on the first, second, and third floors. There are no actual nodes in the basement, but you can get signal there from the 1st floor nodes.

Come and check it out!

RefWorks using science databases

Learn how to use RefWorks focusing on science databases such as Agricola, PubMed and Web of Science.

Using RefWorks with Science Databases - Integrated Sciences and Engineering Library

Tuesday, April 15, 2008, 11:15 am-12:15 pm
Wednesday, April 16, 2008, 4:00-5:00 pm

The workshops will cover the basics: how to access RefWorks, search catalogs, import references from library databases, retrieve and manage citations, and create bibliographies according to various citation styles (e.g. MLA or APA). They will also cover more in-depth applications: how to manipulate your database, use Write-N-Cite to add parenthetical references to your work, use RefShare to share folders with other researchers, and other questions you may have.

To register email refworks@library.umass.edu

DIGITAL QUADRANGLE SERIES COLLOQUIUM

A press release from the UMass Amherst Libraries:

DIGITAL QUADRANGLE SERIES COLLOQUIUM

“Engaging the Web for Scholarship, Pedagogy, and Publication”


Amherst, MA – UMass Amherst will host “Engaging the Web for Scholarship, Pedagogy, and Publication” on March 28, 2008, from 9:30 a.m. – 1:30 p.m. in Campus Center Room 163C at UMass Amherst. Dr. Siva Vaidhyanathan, associate professor of Media Studies and Law at the University of Virginia, will give the keynote talk “The Googlization of Everything.” The program will also include a faculty panel presentation of Scholarworks implementations, remarks on the Carnegie Classification on Community Engagement, and a facilitated luncheon that will result in action plans for keeping author rights and publishing in an online environment, addressing concerns about Intellectual Property (IP), and adopting ScholarWorks. Dr. Vaidhyanthan’s talk and faculty presentations are open to the public. The roundtable lunch portion of the program is open to UMass Amherst faculty and staff only.

A cultural historian and media scholar, Siva Vaidhyanathan is the author of Copyrights and Copywrongs: The Rise of Intellectual Property and How it Threatens Creativity (New York University Press, 2001); and The Anarchist in the Library: How Peer-to-Peer Networks are Transforming Politics, Culture, and Information (Basic Books, 2003). He is co-editor of Rewiring the “Nation”: The Place of Technology in American Studies (Johns Hopkins University Press, 2007). After five years as a professional journalist, Vaidhyanathan earned a PhD in American Studies from the University of Texas at Austin. Vaidhyanathan has taught at the University of Texas, Wesleyan University, the University of Wisconsin at Madison, and New York University. He is currently associate professor of Media Studies and Law at the University of Virginia and writing his next book, The Googlization of Everything, a critical examination of Google's disruptive effect on culture, commerce, and community, on a public website produced by the Institute.

Scholarworks@UMassAmherst (http://www.scholarworks.umass.edu) is one way the campus supports the open communication of the scholarship at UMass Amherst. Over the past several years, UMass Amherst has made a significant investment in ScholarWorks to enable the shift to a digital culture. Using this digital technology and the web has its benefits but its use also raises many questions including, "Have I been losing the rights to my own work?" "How can I keep my author rights?" and, "If my work isn't online, is it invisible?"

ScholarWorks provides the infrastructure and support for creating access and dissemination vehicles and providing the long-term preservation of research and scholarly products. Critical for this transformation are faculty awareness of author and IP rights, alternative digital publishing platforms, and knowledge of how to use ScholarWorks. The final portion of this program, a facilitated roundtable discussion for UMass Amherst faculty and staff, will be devoted to this awareness. Participants will leave with actionable plans for their use of ScholarWorks.

This third annual Digital Quadrangle Series Colloquium is sponsored by the UMass Amherst Libraries, Office for Research, Center for Teaching, the Graduate School, and new this year, the Office of Outreach.

For more information, contact Marilyn Billings, 545-6891, mbillings@library.umass.edu, or Marla Michel, 577-0092, marla@research.umass.edu, or visit http://scholarworks.umass.edu/dq/. Faculty RSVP is requested to Marilyn Billings by Wednesday, March 19, 2008.

Indigenous maps safeguard territories - an article from an environmental research newswire.

Indigenous people know their own territory best, and if they can create a map which includes all the places that are important to them, it is a powerful tool when working with corporations.

This article comes from a useful environmental newswire, Environmental Research Web.